Motif HL_47100.1 Version HL_47100.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7OSM_115 | 7OSM | 0.6094 | 5 | tRNA D-loop | ASIT | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | ncWW | |
| 2 | HL_3SKL_006 | 3SKL | 0.0000 | 3 | B | RNA (66-MER) | A | 65 | A | 66 | C | 67 | U | 71 | U | 72 | cWW | ncWW | |
| 3 | HL_2Y9H_005 | 2Y9H | 0.2493 | 3 | J | RNA (19-mer) | A | 10 | C | 11 | G | 12 | G | 16 | U | 17 | cWW | ncWH | |
| 4 | HL_5X6B_001 | 5X6B | 0.3942 | 6 | P | tRNA | C | 12 | U | 13 | A | 14 | A | 21 | G | 22 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUCGGUAG | 1 |
| AACCUAUU | 1 |
| ACGCGUGU | 1 |
| CUAGGGGCUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUCGGUA | 1 |
| ACCUAU | 1 |
| CGCGUG | 1 |
| UAGGGGCUA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- tRNA D-loop (1)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.25 | Avg 0.43 | Max 0.90
Coloring options: