HL_4KZZ_024

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZZ_024 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.1158

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4KZZ|1|i|G|1137
4KZZ|1|i|G|1138
4KZZ|1|i|A|1139
4KZZ|1|i|A|1140
4KZZ|1|i|A|1141
4KZZ|1|i|C|1142

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain C

40S Ribosomal Protein S2

Chain W

40S Ribosomal Protein S15A

Chain a

40S Ribosomal Protein S26