HL_4KZZ_036

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

4KZZ|1|j|C|16, 4KZZ|1|j|G|17, 4KZZ|1|j|G|18, 4KZZ|1|j|A|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZZ_036 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.1603

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_65478.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

4

Unit IDs

4KZZ|1|j|C|13
4KZZ|1|j|A|14
4KZZ|1|j|G|15
4KZZ|1|j|C|16
4KZZ|1|j|G|17
4KZZ|1|j|G|18
4KZZ|1|j|A|19
4KZZ|1|j|A|20
4KZZ|1|j|G|21

Current chains

Chain j

initiator Met-RNA-i

Nearby chains