HL_4KZZ_037

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

GCCCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZZ_037 not in the Motif Atlas

Homologous match to HL_5E81_212

Geometric discrepancy: 0.1207

The information below is about HL_5E81_212

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4KZZ|1|j|G|30
4KZZ|1|j|C|31
4KZZ|1|j|C|32
4KZZ|1|j|C|33
4KZZ|1|j|A|34
4KZZ|1|j|U|35
4KZZ|1|j|A|36
4KZZ|1|j|A|37
4KZZ|1|j|C|38

Current chains

Chain j

initiator Met-RNA-i

Nearby chains

Chain Q

40S Ribosomal Protein S16

Chain i

Small subunit ribosomal RNA; SSU rRNA

Chain k

mRNA