HL_4L47_006

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4L47|1|QA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4L47_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.064

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4L47|1|QA|G|259
4L47|1|QA|G|260
4L47|1|QA|U|261
4L47|1|QA|A|262
4L47|1|QA|A|263
4L47|1|QA|U|264
4L47|1|QA|G|265
4L47|1|QA|G|266
4L47|1|QA|C|267

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QQ

30S ribosomal protein S17

Chain QT

30S ribosomal protein S20