HL_4L8R_002

3D structure

PDB id

4L8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mrna stem-loop, human stem-loop binding protein and 3'hexo ternary complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUUCA

Length

6 nucleotides

Bulged bases

4L8R|1|D|U|12, 4L8R|1|D|U|13, 4L8R|1|D|C|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4L8R_002 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.1406

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

4L8R|1|D|U|11
4L8R|1|D|U|12
4L8R|1|D|U|13
4L8R|1|D|U|14
4L8R|1|D|C|15
4L8R|1|D|A|16

Current chains

Chain D

HISTONE MRNA STEM-LOOP

Nearby chains

Chain E

3'-5' exoribonuclease 1