HL_4LF9_026

3D structure

PDB id

4LF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

4LF9|1|A|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LF9_026 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2974

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4LF9|1|A|G|1133
4LF9|1|A|G|1134
4LF9|1|A|U|1135
4LF9|1|A|U|1136
4LF9|1|A|C|1137
4LF9|1|A|G|1138
4LF9|1|A|G|1139
4LF9|1|A|C|1140
4LF9|1|A|C|1141

Current chains

Chain A

16S rRNA

Nearby chains