HL_4LFA_034

3D structure

PDB id

4LFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFA_034 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2361

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4LFA|1|A|C|1029
4LFA|1|A|C|1030
4LFA|1|A|G|1030|||A
4LFA|1|A|C|1030|||B
4LFA|1|A|G|1030|||C
4LFA|1|A|A|1030|||D
4LFA|1|A|G|1031
4LFA|1|A|G|1032

Current chains

Chain A

16S rRNA

Nearby chains