Motif HL_97521.4 Version HL_97521.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8B0X_019 | 8B0X | 0.2969 | 1 | A | SSU rRNA | G | 963 | A | 964 | U | 965 | 2MG | 966 | 5MC | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW |
| 2 | HL_4LFB_021 | 4LFB | 0.1928 | 1 | A | SSU rRNA | G | 963 | A | 964 | A | 965 | M2G | 966 | 5MC | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW |
| 3 | HL_9PN5_101 | 9PN5 | 0.0744 | 1 | B5 | SSU rRNA | G | 1188 | A | 1189 | C | 1190 | B8N | 1191 | C | 1192 | A | 1193 | A | 1194 | C | 1195 | C | 1197 | cWW |
| 4 | HL_9H3G_099 | 9H3G | 0.0666 | 1 | h1 | SSU rRNA | G | 1189 | A | 1190 | C | 1191 | C4J | 1192 | C | 1193 | A | 1194 | A | 1195 | C | 1196 | C | 1198 | cWW |
| 5 | HL_8GLP_108 | 8GLP | 0.0505 | 1 | S2 | SSU rRNA | G | 1245 | A | 1246 | C | 1247 | B8N | 1248 | C | 1249 | A | 1250 | A | 1251 | C | 1252 | C | 1254 | cWW |
| 6 | HL_9SUM_092 | 9SUM | 0.0000 | 1 | CA | SSU rRNA | G | 1158 | A | 1159 | C | 1160 | C | 1161 | C | 1162 | A | 1163 | A | 1164 | C | 1165 | C | 1167 | cWW |
| 7 | HL_8CRE_216 | 8CRE | 0.0694 | 1 | CM | SSU rRNA | G | 1173 | A | 1174 | C | 1175 | U | 1176 | C | 1177 | A | 1178 | A | 1179 | C | 1180 | C | 1182 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAACGC | 1 |
| GAA(M2G)(5MC)AACGC | 1 |
| GAC(B8N)CAACAC | 1 |
| GAC(C4J)CAACAC | 1 |
| GACCAACAC | 1 |
| GACCCAACAC | 1 |
| GACUCAACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AC(B8N)CAACA | 2 |
| AU(2MG)(5MC)AACG | 1 |
| AA(M2G)(5MC)AACG | 1 |
| AC(C4J)CAACA | 1 |
| ACCCAACA | 1 |
| ACUCAACA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.14 | Max 0.33
Coloring options: