HL_4LFZ_015

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_015 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.1725

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4LFZ|1|QA|C|689
4LFZ|1|QA|G|690
4LFZ|1|QA|G|691
4LFZ|1|QA|U|692
4LFZ|1|QA|G|693
4LFZ|1|QA|A|694
4LFZ|1|QA|A|695
4LFZ|1|QA|A|696
4LFZ|1|QA|U|697
4LFZ|1|QA|G|698

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QK

30S ribosomal protein S11

Chain RA

Large subunit ribosomal RNA; LSU rRNA