HL_4LFZ_048

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4LFZ|1|RA|G|329, 4LFZ|1|RA|A|330, 4LFZ|1|RA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_048 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.119

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4LFZ|1|RA|G|327
4LFZ|1|RA|U|328
4LFZ|1|RA|G|329
4LFZ|1|RA|A|330
4LFZ|1|RA|A|331
4LFZ|1|RA|A|332
4LFZ|1|RA|G|333
4LFZ|1|RA|C|334
4LFZ|1|RA|C|335

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24