3D structure

PDB id
4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.92 Å

Loop

Sequence
UGAAAAG
Length
7 nucleotides
Bulged bases
4LFZ|1|RA|A|781, 4LFZ|1|RA|A|784
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4LFZ_060 not in the Motif Atlas
Homologous match to HL_7A0S_023
Geometric discrepancy: 0.1484
The information below is about HL_7A0S_023
Detailed Annotation
UNCG variation
Broad Annotation
UNCG variation
Motif group
HL_53890.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
15

Unit IDs

4LFZ|1|RA|U|779
4LFZ|1|RA|G|780
4LFZ|1|RA|A|781
4LFZ|1|RA|A|782
4LFZ|1|RA|A|783
4LFZ|1|RA|A|784
4LFZ|1|RA|G|785

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RD
50S ribosomal protein L2

Coloring options:


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