HL_4LFZ_089

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4LFZ|1|RA|G|2210, 4LFZ|1|RA|G|2211, 4LFZ|1|RA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_089 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2272

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.5

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

4LFZ|1|RA|C|2209
4LFZ|1|RA|G|2210
4LFZ|1|RA|G|2211
4LFZ|1|RA|A|2212
4LFZ|1|RA|U|2213
4LFZ|1|RA|G|2215

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2