Motif HL_32346.6 Version HL_32346.6 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6M0X_002 | 6M0X | 0.1726 | 1 | B | RNA (71-MER) | U | 56 | C | 58 | A | 59 | cWW |
| 2 | HL_6U8D_003 | 6U8D | 0.1320 | 1 | A | JIIIabc RNA (68-MER) | C | 232 | U | 234 | G | 235 | cWW |
| 3 | HL_2UWM_002 | 2UWM | 0.1715 | 1 | D | RNA (23-mer) | G | 22 | U | 24 | C | 25 | cWW |
| 4 | HL_5CCB_002 | 5CCB | 0.1295 | 2 | N | tRNA | U | 33 | U | 35 | A | 37 | cWW |
| 5 | HL_9E6Q_029 | 9E6Q | 0.0000 | 2 | 1 | LSU rRNA | C | 1299 | U | 1301 | G | 1303 | cWW |
| 6 | HL_8VM8_002 | 8VM8 | 0.1279 | 2 | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 39 | U | 41 | G | 43 | cWW |
| 7 | HL_8OI5_004 | 8OI5 | 0.1478 | 2 | 1 | LSU rRNA | C | 131 | U | 133 | G | 135 | cWW |
| 8 | HL_8VM9_005 | 8VM9 | 0.2702 | 2 | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 34 | U | 36 | G | 38 | cWW |
| 9 | HL_8P9A_116 | 8P9A | 0.1955 | 2 | AR | LSU rRNA | C | 132 | U | 134 | G | 136 | cWW |
| 10 | HL_9DFE_050 | 9DFE | 0.2613 | 3 | 1A | LSU rRNA | C | 2205 | A | 2208 | G | 2219 | cWW |
| 11 | HL_9C2K_003 | 9C2K | 0.8665 | 2 | R | Rev Response Element | C | 20 | A | 22 | G | 24 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUG | 2 |
| UUCA | 1 |
| CGUG | 1 |
| GGUC | 1 |
| UUUUA | 1 |
| CGUUG | 1 |
| CUUUG | 1 |
| CUUCG | 1 |
| CGGAUG | 1 |
| CAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU | 2 |
| UUU | 2 |
| AUU | 2 |
| UC | 1 |
| GUU | 1 |
| UUC | 1 |
| GGAU | 1 |
| AAU | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: