HL_4LFZ_092

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_092 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2815

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4LFZ|1|RA|G|2303
4LFZ|1|RA|G|2304
4LFZ|1|RA|A|2305
4LFZ|1|RA|C|2306
4LFZ|1|RA|G|2307
4LFZ|1|RA|G|2308
4LFZ|1|RA|A|2309
4LFZ|1|RA|A|2310
4LFZ|1|RA|A|2311
4LFZ|1|RA|U|2312
4LFZ|1|RA|C|2313

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RG

50S ribosomal protein L5