HL_4LFZ_133

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4LFZ|1|XA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_133 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1115

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

4LFZ|1|XA|G|1089
4LFZ|1|XA|U|1090
4LFZ|1|XA|U|1091
4LFZ|1|XA|A|1092
4LFZ|1|XA|A|1093
4LFZ|1|XA|G|1094
4LFZ|1|XA|U|1095
4LFZ|1|XA|C|1096

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XG

30S ribosomal protein S7