HL_4LFZ_157

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GGUUCGUGGAGCC

Length

13 nucleotides

Bulged bases

4LFZ|1|YA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_157 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.309

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4LFZ|1|YA|G|381
4LFZ|1|YA|G|382
4LFZ|1|YA|U|383
4LFZ|1|YA|U|384
4LFZ|1|YA|C|385
4LFZ|1|YA|G|386
4LFZ|1|YA|U|387
4LFZ|1|YA|G|388
4LFZ|1|YA|G|389
4LFZ|1|YA|A|390
4LFZ|1|YA|G|391
4LFZ|1|YA|C|392
4LFZ|1|YA|C|393

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YP

50S ribosomal protein L15