HL_4LFZ_161

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

4LFZ|1|YA|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_161 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2795

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4LFZ|1|YA|C|544
4LFZ|1|YA|G|545
4LFZ|1|YA|C|546
4LFZ|1|YA|A|547
4LFZ|1|YA|A|548
4LFZ|1|YA|G|549

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YN

50S ribosomal protein L13

Chain YV

50S ribosomal protein L21