HL_4LFZ_171

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4LFZ|1|YA|U|958, 4LFZ|1|YA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_171 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1287

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4LFZ|1|YA|C|955
4LFZ|1|YA|G|956
4LFZ|1|YA|A|957
4LFZ|1|YA|U|958
4LFZ|1|YA|A|959
4LFZ|1|YA|A|960
4LFZ|1|YA|C|961
4LFZ|1|YA|G|962

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YQ

50S ribosomal protein L16