HL_4LFZ_219

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GCGAAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_219 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2477

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4LFZ|1|QA|G|725
4LFZ|1|QA|C|726
4LFZ|1|QA|G|727
4LFZ|1|QA|A|728
4LFZ|1|QA|A|729
4LFZ|1|QA|G|730
4LFZ|1|QA|G|731
4LFZ|1|QA|C|732

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QO

30S ribosomal protein S15

Chain QR

30S ribosomal protein S18