HL_4LFZ_240

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4LFZ|1|RA|G|1954, 4LFZ|1|RA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_240 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1864

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4LFZ|1|RA|G|1949
4LFZ|1|RA|G|1950
4LFZ|1|RA|U|1951
4LFZ|1|RA|A|1952
4LFZ|1|RA|A|1953
4LFZ|1|RA|G|1954
4LFZ|1|RA|U|1955
4LFZ|1|RA|U|1956
4LFZ|1|RA|C|1957

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RO

50S ribosomal protein L14