Motif HL_61418.2 Version HL_61418.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_224 | 8CRE | 0.7595 | 1 | T-loop with 1 bulged base | CM | SSU rRNA | G | 1581 | U | 1582 | C | 1583 | A | 1584 | U | 1585 | C | 1586 | A | 1587 | C | 1589 | cWW | tWH | |
| 2 | HL_8GLP_116 | 8GLP | 0.6918 | 1 | S2 | SSU rRNA | G | 1658 | U | 1659 | C | 1660 | A | 1661 | U | 1662 | A | 1663 | A | 1664 | C | 1666 | cWW | tWH | ||
| 3 | HL_4V9F_051 | 4V9F | 0.1614 | 1 | 0 | LSU rRNA | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW | |||
| 4 | HL_9E6Q_048 | 9E6Q | 0.1364 | 1 | 1 | LSU rRNA | G | 2070 | OMG | 2071 | U | 2072 | A | 2073 | A | 2074 | G | 2075 | OMU | 2077 | C | 2078 | cWW | |||
| 5 | HL_8B0X_077 | 8B0X | 0.0912 | 1 | a | LSU rRNA | G | 1953 | G | 1954 | U | 1955 | A | 1956 | A | 1957 | G | 1958 | U | 1960 | C | 1961 | cWW | |||
| 6 | HL_4WF9_046 | 4WF9 | 0.1082 | 1 | X | LSU rRNA | G | 1976 | G | 1977 | U | 1978 | A | 1979 | A | 1980 | G | 1981 | U | 1983 | C | 1984 | cWW | ncWB | ||
| 7 | HL_9DFE_047 | 9DFE | 0.0000 | 1 | 1A | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB | ||
| 8 | HL_7A0S_048 | 7A0S | 0.1053 | 1 | X | LSU rRNA | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB | ||
| 9 | HL_5T83_003 | 5T83 | 0.6493 | 1 | T-loop related | A | Guanidine-I riboswitch | G | 77 | A | 78 | U | 79 | A | 80 | A | 81 | A | 82 | A | 83 | C | 85 | cWW | ntWH | tWH |
| 10 | HL_6DLR_003 | 6DLR | 0.6388 | 1 | T-loop related | A | Guanidine-I riboswitch | G | 82 | A | 83 | U | 84 | A | 85 | G | 86 | A | 87 | A | 88 | C | 90 | cWW | tWH | tWH |
| 11 | HL_7MLW_003 | 7MLW | 0.6505 | 1 | T-loop related | F | Guanidine-I riboswitch | G | 112 | A | 113 | U | 114 | A | 115 | A | 116 | A | 117 | A | 118 | C | 120 | cWW | tWH | tWH |
| 12 | HL_5X2G_003 | 5X2G | 0.8515 | 1 | T-loop related | B | sgRNA | G | 73 | U | 74 | U | 75 | A | 76 | C | 77 | A | 78 | A | 79 | C | 81 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAGUUC | 4 |
| GAUAAAAGC | 2 |
| GUCAUCAGC | 1 |
| GUCAUAAGC | 1 |
| CAUCAGUAG | 1 |
| G(OMG)UAAGU(OMU)C | 1 |
| GAUAGAAGC | 1 |
| GUUACAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAGUU | 4 |
| AUAAAAG | 2 |
| UCAUCAG | 1 |
| UCAUAAG | 1 |
| AUCAGUA | 1 |
| (OMG)UAAGU(OMU) | 1 |
| AUAGAAG | 1 |
| UUACAAU | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- T-loop related (4)
- T-loop with 1 bulged base (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.52 | Max 0.94
Coloring options: