3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
CCUGCAAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4LNT_094 not in the Motif Atlas
Homologous match to HL_7RQB_057
Geometric discrepancy: 0.0856
The information below is about HL_7RQB_057
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53619.1
Basepair signature
cWW-F-F
Number of instances in this motif group
11

Unit IDs

4LNT|1|RA|C|2355
4LNT|1|RA|C|2356
4LNT|1|RA|U|2357
4LNT|1|RA|G|2358
4LNT|1|RA|C|2359
4LNT|1|RA|A|2360
4LNT|1|RA|A|2361
4LNT|1|RA|G|2362

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R8
50S ribosomal protein L35
Chain RP
50S ribosomal protein L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 8.2985 s