Motif HL_53619.1 Version HL_53619.1 of this group appears in releases 3.85 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_024 | 7A0S | 0.2030 | 2 | X | U | 839 | G | 841 | A | 842 | G | 844 | cWW | |
| 2 | HL_4V9F_026 | 4V9F | 0.2000 | 2 | 0 | U | 919 | G | 921 | A | 922 | G | 924 | cWW | |
| 3 | HL_4WF9_025 | 4WF9 | 0.0700 | 2 | X | U | 871 | U | 873 | A | 874 | G | 876 | cWW | |
| 4 | HL_5J7L_157 | 5J7L | 0.0000 | 2 | DA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 5 | HL_7RQB_025 | 7RQB | 0.0572 | 2 | 1A | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 6 | HL_7RQB_057 | 7RQB | 0.7381 | 4 | GNRA with extra cWW (H) | 1A | C | 2355 | C | 2356 | U | 2357 | G | 2362 | cWW |
| 7 | HL_4WF9_053 | 4WF9 | 0.7733 | 4 | GNRA with extra cWW | X | C | 2382 | C | 2383 | U | 2384 | G | 2389 | cWW |
| 8 | HL_6DTD_001 | 6DTD | 0.9746 | 3 | C | C | 16 | U | 17 | U | 20 | G | 22 | cWW | |
| 9 | HL_5TBW_075 | 5TBW | 0.8774 | 3 | 4 | C | 108 | A | 109 | C | 110 | G | 114 | cWW | |
| 10 | HL_8C3A_076 | 8C3A | 0.9066 | 3 | 4 | C | 108 | A | 109 | C | 110 | G | 114 | cWW | |
| 11 | HL_1H4S_002 | 1H4S | 0.9417 | 3 | T | U | 32 | U | 33 | C | 34 | A | 38 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAGG | 3 |
| CACAUUG | 2 |
| UUGAGG | 1 |
| UCGAAG | 1 |
| CCUGCAAG | 1 |
| CCUACAAG | 1 |
| CUUUUUG | 1 |
| UUCGGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAG | 3 |
| ACAUU | 2 |
| UGAG | 1 |
| CGAA | 1 |
| CUGCAA | 1 |
| CUACAA | 1 |
| UUUUU | 1 |
| UCGGG | 1 |
- Annotations
-
- (9)
- GNRA with extra cWW (1)
- GNRA with extra cWW (H) (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.06 | Avg 0.55 | Max 1.00
Coloring options: