3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
CUAAAAGGUAACG
Length
13 nucleotides
Bulged bases
4LSK|1|YA|A|2268, 4LSK|1|YA|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4LSK_199 not in the Motif Atlas
Homologous match to HL_7RQB_054
Geometric discrepancy: 0.0893
The information below is about HL_7RQB_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.6
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
7

Unit IDs

4LSK|1|YA|C|2264
4LSK|1|YA|U|2265
4LSK|1|YA|A|2266
4LSK|1|YA|A|2267
4LSK|1|YA|A|2268
4LSK|1|YA|A|2269
4LSK|1|YA|G|2270
4LSK|1|YA|G|2271
4LSK|1|YA|U|2272
4LSK|1|YA|A|2273
4LSK|1|YA|A|2274
4LSK|1|YA|C|2275
4LSK|1|YA|G|2276

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y0
50S ribosomal protein L27
Chain YQ
50S ribosomal protein L16

Coloring options:


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