HL_4LVV_001

3D structure

PDB id

4LVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the THF riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

AAUGGGAUGUCGU

Length

13 nucleotides

Bulged bases

4LVV|1|A|G|36, 4LVV|1|A|C|43

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LVV_001 not in the Motif Atlas

Geometric match to HL_4LVW_001

Geometric discrepancy: 0.0698

The information below is about HL_4LVW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70658.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4LVV|1|A|A|33
4LVV|1|A|A|34
4LVV|1|A|U|35
4LVV|1|A|G|36
4LVV|1|A|G|37
4LVV|1|A|G|38
4LVV|1|A|A|39
4LVV|1|A|U|40
4LVV|1|A|G|41
4LVV|1|A|U|42
4LVV|1|A|C|43
4LVV|1|A|G|44
4LVV|1|A|U|45

Current chains

Chain A

THF riboswitch

Nearby chains