Motif HL_70658.1 Version HL_70658.1 of this group appears in releases 3.91 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_160 | 8P9A | 0.0000 | 1 | AR | LSU rRNA | A | 2252 | G | 2253 | U | 2254 | A | 2255 | C | 2257 | U | 2258 | A | 2259 | U | 2260 | G | 2261 | A | 2262 | C | 2263 | U | 2264 | cWW | ntHW | ||
| 2 | HL_4LVW_001 | 4LVW | 0.7247 | 1 | A | THF riboswitch | A | 33 | A | 34 | U | 35 | G | 36 | G | 37 | G | 38 | A | 39 | U | 40 | G | 41 | U | 42 | G | 44 | U | 45 | cWW | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUAACUAUGACU | 1 |
| AAUGGGAUGUCGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAACUAUGAC | 1 |
| AUGGGAUGUCG | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.72 | Avg 0.36 | Max 0.72
Coloring options: