HL_4M6D_008

3D structure

PDB id

4M6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the aptamer minF-lysozyme complex.

Experimental method

X-RAY DIFFRACTION

Resolution

2.68 Å

Loop

Sequence

GUUACUUAGUUC

Length

12 nucleotides

Bulged bases

4M6D|1|D|U|29, 4M6D|1|D|U|34, 4M6D|1|D|U|37, 4M6D|1|D|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4M6D_008 not in the Motif Atlas

Geometric match to HL_4M6D_010

Geometric discrepancy: 0.087

The information below is about HL_4M6D_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04725.1

Basepair signature

cWW-cWS-cWW-cWW-cWS

Number of instances in this motif group

2

Unit IDs

4M6D|1|D|G|28
4M6D|1|D|U|29
4M6D|1|D|U|30
4M6D|1|D|A|31
4M6D|1|D|C|32
4M6D|1|D|U|33
4M6D|1|D|U|34
4M6D|1|D|A|35
4M6D|1|D|G|36
4M6D|1|D|U|37
4M6D|1|D|U|38
4M6D|1|D|C|39

Current chains

Chain D

aptamer

Nearby chains

Chain C

Lysozyme C

Chain G

Lysozyme C

Chain L

aptamer