4M6D Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4M6D_007 | 1/B/28:39 | No text annotation | geometric HL_4M4O_002 HL_04725.1 | |
| HL_4M6D_001 | 1/B/32:36 | D-loop related | geometric HL_4M4O_001 HL_46501.1 | |
| HL_4M6D_008 | 1/D/28:39 | No text annotation | geometric HL_4M6D_010 HL_04725.1 | |
| HL_4M6D_002 | 1/D/32:36 | D-loop related | geometric HL_4M6D_004 HL_69752.2 | |
| HL_4M6D_009 | 1/F/28:39 | No text annotation | geometric HL_4M4O_002 HL_04725.1 | |
| HL_4M6D_003 | 1/F/32:36 | D-loop related | geometric HL_4M6D_004 HL_69752.2 | |
| HL_4M6D_010 | 1/H/28:39 | No text annotation HL_04725.1 | ||
| HL_4M6D_004 | 1/H/32:36 | D-loop related HL_69752.2 | ||
| HL_4M6D_011 | 1/J/28:39 | No text annotation | geometric HL_4M6D_010 HL_04725.1 | |
| HL_4M6D_005 | 1/J/32:36 | D-loop related | geometric HL_4M6D_004 HL_69752.2 | |
| HL_4M6D_012 | 1/L/28:39 | No text annotation | geometric HL_4M4O_002 HL_04725.1 | |
| HL_4M6D_006 | 1/L/32:36 | D-loop related | geometric HL_4M4O_001 HL_46501.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4M6D_001 | 1/B/15:23, 1/B/44:45 | No text annotation | ||
| IL_4M6D_002 | 1/B/26:28, 1/B/39:41 | No text annotation | geometric IL_4M4O_004 IL_31737.3 | |
| IL_4M6D_003 | 1/B/28:32, 1/B/36:39 | Major groove minor groove platform with intercalation; mini C-loop | geometric IL_4M4O_005 IL_81522.2 | |
| IL_4M6D_004 | 1/D/12:14, 1/D/46:48 | Isolated non-canonical cWW pair | geometric IL_4M6D_011 IL_87907.2 | |
| IL_4M6D_005 | 1/D/15:23, 1/D/44:45 | No text annotation | geometric IL_4M6D_012 IL_58960.1 | |
| IL_4M6D_006 | 1/D/26:28, 1/D/39:41 | No text annotation | geometric IL_4M4O_004 IL_31737.3 | |
| IL_4M6D_007 | 1/D/28:32, 1/D/36:39 | Major groove minor groove platform with intercalation; mini C-loop | geometric IL_4M6D_014 IL_81522.2 | |
| IL_4M6D_008 | 1/F/15:23, 1/F/44:45 | No text annotation | ||
| IL_4M6D_009 | 1/F/26:28, 1/F/39:41 | No text annotation | geometric IL_4M4O_004 IL_31737.3 | |
| IL_4M6D_010 | 1/F/28:32, 1/F/36:39 | Major groove minor groove platform with intercalation; mini C-loop | geometric IL_4M4O_005 IL_81522.2 | |
| IL_4M6D_011 | 1/H/12:14, 1/H/46:48 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_4M6D_024 | 1/H/12:23, 1/H/44:48 | No text annotation IL_81731.1 | ||
| IL_4M6D_012 | 1/H/15:23, 1/H/44:45 | No text annotation IL_58960.1 | ||
| IL_4M6D_013 | 1/H/26:28, 1/H/39:41 | No text annotation IL_31737.3 | ||
| IL_4M6D_014 | 1/H/28:32, 1/H/36:39 | Major groove minor groove platform with intercalation; mini C-loop IL_81522.2 | ||
| IL_4M6D_015 | 1/J/15:23, 1/J/44:45 | No text annotation | ||
| IL_4M6D_017 | 1/J/26:28, 1/J/39:41 | No text annotation | geometric IL_4M4O_004 IL_31737.3 | |
| IL_4M6D_018 | 1/J/28:32, 1/J/36:39 | Major groove minor groove platform with intercalation; mini C-loop | geometric IL_4M4O_005 IL_81522.2 | |
| IL_4M6D_019 | 1/L/12:14, 1/L/46:48 | Isolated non-canonical cWW pair | geometric IL_4M6D_011 IL_87907.2 | |
| IL_4M6D_020 | 1/L/15:23, 1/L/44:45 | No text annotation | geometric IL_4M6D_012 IL_58960.1 | |
| IL_4M6D_022 | 1/L/26:28, 1/L/39:41 | No text annotation | geometric IL_4M4O_004 IL_31737.3 | |
| IL_4M6D_023 | 1/L/28:32, 1/L/36:39 | Major groove minor groove platform with intercalation; mini C-loop | geometric IL_4M4O_005 IL_81522.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4M6D_016 | Isolated non-canonical cWW pair | ||
| IL_4M6D_021 | Isolated cWH basepair |
Valid loops
No loops found
Problematic loops
No problematic loops
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