HL_4MEH_003

3D structure

PDB id

4MEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro evolved glmS ribozyme triple mutant, calcium ion complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUCCUGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4MEH_003 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.2174

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4MEH|1|B|C|59
4MEH|1|B|U|61
4MEH|1|B|C|62
4MEH|1|B|C|63
4MEH|1|B|U|64
4MEH|1|B|G|65
4MEH|1|B|C|66
4MEH|1|B|G|67

Current chains

Chain B

(122-MER) ribozyme

Nearby chains