HL_4NVV_022

3D structure

PDB id

4NVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

4NVV|1|A|U|794, 4NVV|1|A|A|798, 4NVV|1|A|A|799

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88311.5

Basepair signature

cWW-R-tSW-R-R

Number of instances in this motif group

8

Unit IDs

4NVV|1|A|G|791
4NVV|1|A|G|792
4NVV|1|A|A|793
4NVV|1|A|U|794
4NVV|1|A|G|795
4NVV|1|A|C|796
4NVV|1|A|A|797
4NVV|1|A|A|798
4NVV|1|A|A|799
4NVV|1|A|C|800

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S Ribosomal Protein L32

Chain 7

50S Ribosomal Protein L34

Chain E

50S Ribosomal Protein L3

Chain W

50S Ribosomal Protein L22