Motif HL_88311.5 Version HL_88311.5 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 5-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VWW_020 | 1VWW | 0.2551 | 1 | 5 | 28S ribosomal RNA | A | 1593 | C | 1594 | G | 1595 | G | 1597 | C | 1598 | A | 1599 | A | 1601 | U | 1602 | ntSW | ||
| 2 | HL_4A1B_021 | 4A1B | 0.1033 | 2 | 1 | 26S RRNA | A | 901 | C | 902 | G | 903 | G | 905 | C | 906 | A | 907 | A | 909 | U | 910 | cWW | ntSW | ncWS |
| 3 | HL_4CUV_020 | 4CUV | 0.0000 | 2 | 1 | 25S RRNA | A | 876 | C | 877 | G | 878 | G | 880 | C | 881 | A | 882 | A | 884 | U | 885 | cWW | ntSW | ncWS |
| 4 | HL_4NVV_022 | 4NVV | 0.2589 | 2 | A | 23S Ribosomal RNA | G | 791 | G | 792 | A | 793 | G | 795 | C | 796 | A | 797 | A | 799 | C | 800 | cWW | tSW | cWS |
| 5 | HL_1VW3_015 | 1VW3 | 0.2493 | 2 | A | 21S ribosomal RNA | U | 635 | G | 636 | U | 637 | G | 639 | C | 640 | A | 641 | U | 643 | A | 644 | cWW | tSW | cWS |
| 6 | HL_4IOA_022 | 4IOA | 0.3255 | 2 | X | LSU rRNA | U | 757 | G | 758 | C | 759 | G | 761 | A | 762 | A | 763 | C | 765 | A | 766 | cWW | tSW | ncWS |
| 7 | HL_1S72_024 | 1S72 | 0.2801 | 2 | 0 | LSU rRNA | U | 837 | C | 838 | C | 839 | A | 841 | C | 842 | A | 843 | U | 845 | A | 846 | cWW | tSW | cWS |
| 8 | HL_2QBG_024 | 2QBG | 0.4878 | 2 | B | 23S rRNA | U | 744 | G | 745 | U | 746 | G | 748 | A | 749 | A | 750 | A | 752 | A | 753 | cWW | tSW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGUGCAAAU | 2 |
| GCGAAAGAC | 1 |
| GGAUGCAAAC | 1 |
| UGUUGCAAUA | 1 |
| UGCUGAAACA | 1 |
| UCCUACAAUA | 1 |
| UGUUGAAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUGCAAA | 2 |
| CGAAAGA | 1 |
| GAUGCAAA | 1 |
| GUUGCAAU | 1 |
| GCUGAAAC | 1 |
| CCUACAAU | 1 |
| GUUGAAAA | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_88311.5 | Only in the parent motif |
|---|---|---|---|
| HL_88311.4 Compare | HL_1S72_024, HL_4NVV_022, HL_2QBG_024, HL_4A1B_021, HL_1VW3_015, HL_4IOA_022, HL_4CUV_020 | HL_1VWW_020 |
Children motifs
| Child motif | Common motif instances | Only in HL_88311.5 | Only in the child motif |
|---|---|---|---|
| HL_88311.6 Compare | HL_1S72_024, HL_2QBG_024, HL_4A1B_021, HL_1VW3_015, HL_1VWW_020, HL_4CUV_020, HL_4IOA_022 | HL_4NVV_022 | HL_4QCN_022 |
- Annotations
-
- (8)
- Basepair signature
- cWW-R-tSW-R-R
- Heat map statistics
- Min 0.10 | Avg 0.29 | Max 0.56
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