HL_4NXM_021

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAA(M2G)(5MC)AACGC

Length

10 nucleotides

Bulged bases

4NXM|1|A|A|968, 4NXM|1|A|G|971

QA status

Modified nucleotides: M2G, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4NXM_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.098

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4NXM|1|A|G|963
4NXM|1|A|A|964
4NXM|1|A|A|965
4NXM|1|A|M2G|966
4NXM|1|A|5MC|967
4NXM|1|A|A|968
4NXM|1|A|A|969
4NXM|1|A|C|970
4NXM|1|A|G|971
4NXM|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9

Chain J

ribosomal protein S10

Chain M

ribosomal protein S13