HL_4NYG_001

3D structure

PDB id

4NYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli thiM riboswitch in complex with thiamine

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUCGUAAG

Length

8 nucleotides

Bulged bases

4NYG|1|A|U|25, 4NYG|1|A|U|32

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4NYG_001 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3601

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4NYG|1|A|C|23
4NYG|1|A|U|25
4NYG|1|A|C|30
4NYG|1|A|G|31
4NYG|1|A|U|32
4NYG|1|A|A|34
4NYG|1|A|A|35
4NYG|1|A|G|36

Current chains

Chain A

thiM TPP riboswitch

Nearby chains