HL_4P5J_004

3D structure

PDB id

4P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the tRNA-like structure from Turnip Yellow Mosaic Virus (TYMV), a tRNA mimicking RNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.99 Å

Loop

Sequence

AGGGUCAU

Length

8 nucleotides

Bulged bases (A, C, G, U)

74C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86769.3

Basepair signature

cWW-F-cSS-cSH

Number of instances in this motif group

6

Unit IDs

4P5J|1|A|A|69
4P5J|1|A|G|70
4P5J|1|A|G|71
4P5J|1|A|G|72
4P5J|1|A|U|73
4P5J|1|A|C|74
4P5J|1|A|A|75
4P5J|1|A|U|76

Current chains

Chain A

Turnip yellow mosaic virus mRNA for the coat protein

Nearby chains