Motif HL_08550.2 Version HL_08550.2 of this group appears in releases 4.1 to 4.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3AMU_002 | 3AMU | 0.8138 | 4 | B | tRNA | G | 30 | G | 31 | C | 32 | U | 33 | U | 36 | A | 37 | C | 40 | cWW | ||
| 2 | HL_4P5J_004 | 4P5J | 0.0000 | 1 | A | tRNA-like 3' UTR element | A | 69 | G | 70 | G | 71 | G | 72 | U | 73 | A | 75 | U | 76 | cWW | csS | cSH |
| 3 | HL_4WF9_001 | 4WF9 | 0.3429 | 1 | X | LSU rRNA | G | 67 | A | 68 | C | 69 | G | 70 | A | 71 | A | 73 | U | 74 | ncWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGCUCAUAACC | 1 |
| AGGGUCAU | 1 |
| GACGAUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCUCAUAAC | 1 |
| GGGUCA | 1 |
| ACGAUA | 1 |
Release history
| Release | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 | 4.13 | 4.14 | 4.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 | 2026-08-12 | 2026-09-09 | 2026-10-07 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-cSH
- Heat map statistics
- Min 0.34 | Avg 0.45 | Max 0.85
Coloring options: