Motif HL_08550.2 Version HL_08550.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_001 | 4WF9 | 0.3429 | 1 | X | LSU rRNA | G | 67 | A | 68 | C | 69 | G | 70 | A | 71 | A | 73 | U | 74 | ncWW | cSH | |
| 2 | HL_4P5J_004 | 4P5J | 0.0000 | 1 | A | tRNA-like 3' UTR element | A | 69 | G | 70 | G | 71 | G | 72 | U | 73 | A | 75 | U | 76 | cWW | csS | cSH |
| 3 | HL_3AMU_002 | 3AMU | 0.8138 | 4 | B | tRNA | G | 30 | G | 31 | C | 32 | U | 33 | U | 36 | A | 37 | C | 40 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACGAUAU | 1 |
| AGGGUCAU | 1 |
| GGCUCAUAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACGAUA | 1 |
| GGGUCA | 1 |
| GCUCAUAAC | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-cSH
- Heat map statistics
- Min 0.34 | Avg 0.45 | Max 0.85
Coloring options: