HL_4P6F_019

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_019 not in the Motif Atlas

Homologous match to HL_5J7L_019

Geometric discrepancy: 0.0955

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4P6F|1|QA|C|862
4P6F|1|QA|U|863
4P6F|1|QA|A|864
4P6F|1|QA|A|865
4P6F|1|QA|C|866
4P6F|1|QA|G|867

Current chains

Chain QA

16S ribosomal RNA

Nearby chains

Chain QE

30S ribosomal protein S5

Chain QH

30S ribosomal protein S8