HL_4P6F_031

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4P6F|1|QA|U|1450, 4P6F|1|QA|A|1451, 4P6F|1|QA|G|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_031 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.3203

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.5

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

4P6F|1|QA|C|1449
4P6F|1|QA|U|1450
4P6F|1|QA|A|1451
4P6F|1|QA|C|1452
4P6F|1|QA|G|1453
4P6F|1|QA|G|1454

Current chains

Chain QA

16S ribosomal RNA

Nearby chains

Chain QT

30S ribosomal protein S20