HL_4P6F_050

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4P6F|1|RA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_050 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.071

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4P6F|1|RA|G|327
4P6F|1|RA|U|328
4P6F|1|RA|G|329
4P6F|1|RA|A|330
4P6F|1|RA|A|331
4P6F|1|RA|A|332
4P6F|1|RA|G|333
4P6F|1|RA|C|334
4P6F|1|RA|C|335

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24