HL_4P6F_065

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4P6F|1|RA|U|958, 4P6F|1|RA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_065 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1062

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4P6F|1|RA|C|955
4P6F|1|RA|G|956
4P6F|1|RA|A|957
4P6F|1|RA|U|958
4P6F|1|RA|A|959
4P6F|1|RA|A|960
4P6F|1|RA|C|961
4P6F|1|RA|G|962

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RB

5S ribosomal RNA; 5S rRNA

Chain RQ

50S ribosomal protein L16