HL_4P6F_093

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4P6F|1|RA|A|2268, 4P6F|1|RA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_093 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0597

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4P6F|1|RA|C|2264
4P6F|1|RA|U|2265
4P6F|1|RA|A|2266
4P6F|1|RA|A|2267
4P6F|1|RA|A|2268
4P6F|1|RA|A|2269
4P6F|1|RA|G|2270
4P6F|1|RA|G|2271
4P6F|1|RA|U|2272
4P6F|1|RA|A|2273
4P6F|1|RA|A|2274
4P6F|1|RA|C|2275
4P6F|1|RA|G|2276

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16