HL_4P6F_094

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_094 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2342

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4P6F|1|RA|G|2303
4P6F|1|RA|G|2304
4P6F|1|RA|A|2305
4P6F|1|RA|C|2306
4P6F|1|RA|G|2307
4P6F|1|RA|G|2308
4P6F|1|RA|A|2309
4P6F|1|RA|A|2310
4P6F|1|RA|A|2311
4P6F|1|RA|U|2312
4P6F|1|RA|C|2313

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RG

50S ribosomal protein L5