3D structure

PDB id
4P6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the peptolide 12C bound to bacterial ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GAAGCAACGC
Length
10 nucleotides
Bulged bases
4P6F|1|XA|G|971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4P6F_131 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.1153
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_97521.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4P6F|1|XA|G|963
4P6F|1|XA|A|964
4P6F|1|XA|A|965
4P6F|1|XA|G|966
4P6F|1|XA|C|967
4P6F|1|XA|A|968
4P6F|1|XA|A|969
4P6F|1|XA|C|970
4P6F|1|XA|G|971
4P6F|1|XA|C|972

Current chains

Chain XA
16S ribosomal RNA

Nearby chains

Chain XI
30S ribosomal protein S9
Chain XJ
30S ribosomal protein S10
Chain XM
30S ribosomal protein S13
Chain XV
Transfer RNA; tRNA
Chain XY
Transfer RNA; tRNA

Coloring options:


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