HL_4P6F_135

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4P6F|1|XA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_135 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.087

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

4P6F|1|XA|G|1089
4P6F|1|XA|U|1090
4P6F|1|XA|U|1091
4P6F|1|XA|A|1092
4P6F|1|XA|A|1093
4P6F|1|XA|G|1094
4P6F|1|XA|U|1095
4P6F|1|XA|C|1096

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XG

30S ribosomal protein S7