HL_4P6F_138

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_138 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.0796

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4P6F|1|XA|G|1265
4P6F|1|XA|G|1266
4P6F|1|XA|C|1267
4P6F|1|XA|A|1268
4P6F|1|XA|A|1269
4P6F|1|XA|C|1270

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XM

30S ribosomal protein S13

Chain XS

30S ribosomal protein S19

Chain XU

30S ribosomal protein Thx