HL_4P6F_147
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4P6F_147 not in the Motif Atlas
- Homologous match to HL_4V7M_039
- Geometric discrepancy: 0.3961
- The information below is about HL_4V7M_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4P6F|1|XW|G|30
4P6F|1|XW|A|31
4P6F|1|XW|U|32
4P6F|1|XW|U|33
4P6F|1|XW|G|34
4P6F|1|XW|A|35
4P6F|1|XW|A|36
4P6F|1|XW|A|37
4P6F|1|XW|A|38
4P6F|1|XW|U|39
4P6F|1|XW|C|40
Current chains
- Chain XW
- E-Site tRNA-Phe or A-Site tRNA-Phe
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XG
- 30S ribosomal protein S7
- Chain XK
- 30S ribosomal protein S11
- Chain XV
- Transfer RNA; tRNA
- Chain XX
- mRNA
Coloring options: