HL_4P6F_206

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_206 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0713

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4P6F|1|YA|C|2355
4P6F|1|YA|C|2356
4P6F|1|YA|U|2357
4P6F|1|YA|G|2358
4P6F|1|YA|C|2359
4P6F|1|YA|A|2360
4P6F|1|YA|A|2361
4P6F|1|YA|G|2362

Current chains

Chain YA

23S ribosomal RNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15