HL_4P6F_236
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GACGGAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4P6F_236 not in the Motif Atlas
- Homologous match to HL_5J7L_219
- Geometric discrepancy: 0.3763
- The information below is about HL_5J7L_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50860.2
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4P6F|1|YA|G|2304
4P6F|1|YA|A|2305
4P6F|1|YA|C|2306
4P6F|1|YA|G|2307
4P6F|1|YA|G|2308
4P6F|1|YA|A|2309
4P6F|1|YA|A|2310
4P6F|1|YA|A|2311
4P6F|1|YA|U|2312
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain YG
- 50S ribosomal protein L5
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