Motif HL_50860.2 Version HL_50860.2 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 5-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DFE_198 | 9DFE | 0.1948 | 0 | 1A | LSU rRNA | G | 2304 | A | 2305 | C | 2306 | G | 2307 | G | 2308 | A | 2309 | A | 2310 | A | 2311 | U | 2312 | ncWWa | |
| 2 | HL_5J7L_219 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | G | 2304 | U | 2305 | C | 2306 | G | 2307 | G | 2308 | A | 2309 | C | 2310 | A | 2311 | U | 2312 | ncWWa | ncWH |
| 3 | HL_4V9F_057 | 4V9F | 0.1570 | 0 | 0 | LSU rRNA | G | 2338 | A | 2339 | C | 2340 | A | 2341 | G | 2342 | A | 2343 | G | 2344 | A | 2345 | C | 2346 | cWW | cWH |
| 4 | HL_8P9A_167 | 8P9A | 0.2490 | 0 | AR | LSU rRNA | A | 2673 | A | 2674 | C | 2675 | A | 2676 | G | 2677 | A | 2678 | A | 2679 | A | 2680 | U | 2681 | cWW | cWH |
| 5 | HL_8CRE_055 | 8CRE | 0.2384 | 0 | 1 | LSU rRNA | A | 2645 | A | 2646 | C | 2647 | A | 2648 | G | 2649 | A | 2650 | A | 2651 | A | 2652 | U | 2653 | cWW | cWH |
| 6 | HL_7A0S_076 | 7A0S | 0.7093 | 0 | X | LSU rRNA | G | 2283 | U | 2284 | U | 2285 | G | 2286 | G | 2287 | A | 2288 | A | 2289 | A | 2290 | U | 2291 | ncWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AACAGAAAU | 2 |
| GACGGAAAU | 1 |
| GUCGGACAU | 1 |
| GACAGAGAC | 1 |
| GUUGGAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAGAAA | 2 |
| ACGGAAA | 1 |
| UCGGACA | 1 |
| ACAGAGA | 1 |
| UUGGAAA | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.32 | Max 0.75
Coloring options: