3D structure

PDB id
4P95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Speciation of a group I intron into a lariat capping ribozyme (Circularly permutated ribozyme)
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GCUAAUCAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Anticodon loop related
Broad Annotation
Lariat-capping (LC) ribozyme
Motif group
HL_97724.1
Basepair signature
cWW-bif-R-R-R-R-R
Number of instances in this motif group
28

Unit IDs

4P95|1|A|G|241
4P95|1|A|C|242
4P95|1|A|U|243
4P95|1|A|A|244
4P95|1|A|A|245
4P95|1|A|U|246
4P95|1|A|C|247
4P95|1|A|A|248
4P95|1|A|C|249

Current chains

Chain A
RNA (192-MER)

Nearby chains

No other chains within 10Å

Coloring options:

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